Comparative Functional Analysis WorkshopΒΆ

In this workshop we will do a comparative analysis of several Baltic Sea samples on function. The following topics will be discussed:

  • Find genes on a coassembly of all samples using Prodigal
  • Classify the found genes with similar function in Clusters of Orthologous Groups (COG) using WebMGA
  • Compare the expression of the different COG families and classes by looking at their coverage in different samples using R

The workshop has the following exercises:

  1. Gene Finding Exercise
  2. COG Exercise
  3. Comprative Functional Analysis Exercise