Metagenomic Assembly WorkshopΒΆ

In this metagenomics workshop we will learn how to:

  • Quality trim reads with sickle
  • Perform assemblies with velvet
  • Map back reads to assemblies with bowtie2

The workshop has the following exercises:

At least a basic knowledge of how to work with the command line is required otherwise it will be very difficult to follow some of the examples. Have fun!